Archive for July, 2006

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Karen Armstrong and the fabricated quote

Posted in Media, Quote Mining, Religion, The Critics on July 31st, 2006 by Krauze

Check out this quote, from a Guardian editorial opinion piece by Karen Armstrong:

The fundamentalists' rejection of science is deeply linked to their apocalyptic vision. Even the relatively sober ID theorists segue easily into Rapture-speak. "Great shakings and darkness are descending on Planet Earth," says the ID philosopher Paul Nelson, "but they will be overshadowed by even more amazing displays of God's power and light. Ever the long-term strategist, YHVH is raising up a mighty army of cutting-edge Jewish End-time warriors."

As a service to those of you who know Paul Nelson, I'll wait until you've picked up your jaws from the floor. ID critic Nick Matzke had a hard time believing it as well, and to his credit, he checked out the quote and posted his findings at the anti-ID blog The Panda's Thumb.

Since spurious quotations are bad in general, and not just when the creationists use them, I figured I should check this one. Googling the quote reveals exactly one hit, to a website named "David's Tent". This is apparently the website of Final Frontier Ministries, which is headquartered in Nashville. … [T]here is no evidence whatsoever of any connection between Paul Nelson and the quotes from the David's Tent webpage. For that matter, the word "Nelson" does not appear anywhere on the entire David's Tent website, according to google. The only mention of "Paul" on the page with the quotes is the Apostle Paul … Unless Karen Armstrong has some really amazing evidence that none of us have ever heard of before, She Goofed Big Time.

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Best. Title. Ever!

Posted in Biology, Computer Science, Evolution on July 30th, 2006 by Krauze

Mathematician Stephen Wolfram's A New Kind of Science is devoted to self-organization and complexity theory, or how simple rules can have complex results. Physicist Cosma Shalazi didn't like the book. Judging from the title of his review, "A Rare Blend of Monster Raving Egomania and Utter Batshit Insanity", he really didn't like the book. Here's what he has to say about Wolfram's grasp of biology:

Wolfram displays absolutely no understanding of evolution, or what would be necessary to explain the adaptation of organisms to their environments. This is related to his peculiar views on methodology. If you want to get a rough grasp of how the leopard might get its spots, then building a CA model (or something similar) can be very illuminating. It will not tell you whether that's actually how it works. This is an important example, because there is a classic theory of biological pattern formation, or morphogenesis, first formulated by Turing in the 1950s, which lends itself very easily to modeling in CAs, and with a little fine-tuning produces things which look like animal coats, butterfly wings, etc., etc. The problem is that there is absolutely no reason to think that's how those patterns actually form; no one has identified even a single pair of Turing morphogens, despite decades of searching. Indeed, the more the biologists unraveling the actual mechanisms of morphogenesis, the more complicated and inelegant (but reliable) it looks. If, however, you think you have explained why leopards are spotted after coming up with a toy model that produces spots, it will not occur to you to ask why leopards have spots but polar bears do not, which is to say that you will simply be blind to the whole problem of biological adaptation.

Come think of it, that's a criticism that applies to many evolutionary computer simulations as well (Avida, anyone?).

(HT: Stranger Fruit)

8 Comments »

What do the Wedge and the dodo have in common?

Posted in Intelligent Design, School, The Critics on July 30th, 2006 by Krauze

Allen MacNeill has an update on the "Evolution and Design" course he's teaching at Cornell University. He and his students have evaluated some of the most popular books on the topic, and have found that both books supporting and critical of intelligent design suffer with problems in arguing rationally for their claims. But here is something that really caught my attention:

Johnson/The Wedge of Truth: To my surprise, both the ID supporters and critics in the class almost immediately agreed that Johnson's book was simply a polemic, with no real intellectual (and certainly no scientific) merit. His resort to ad hominem arguments, guilt by association, and the drawing of spurious connections via arguments by analogy were universally agreed to be "outside the bounds of this course" (and to exceed in some cases Dawkins' use of similar tactics), and we simply dropped any further consideration of it as unproductive. Indeed, one ID supporter stated quite clearly that "this book isn't ID", and that the kinds of assertions and polemics that Johnson makes could damage the credibility of ID as a scientific enterprise in the long run.

This is interesting, since many ID critics are heavily invested in the notion of Phillip Johnson as some mastermind, whose "Wedge document" reveal the true nature of intelligent design. But if MacNeill's experience can be extrapolated to other young ID supporters (always a dangerous assumption), we have quite a different picture: A new generation of ID supporters, who have no brief for polemics about cultural reform, and who are just interested in seeing intelligent design succeed as a "scientific enterprise".

How is this going to play out in the post-wedge world? If ID critics continue to cling to their rhetoric about ID supporters as closeted theocrats out to destroy science and democracy, they are only blowing their credibility with an ID-friendly audience. Think about it: Who is the biggest expert on Joe Q. Teleologist's motivations and beliefs? Why, it's Joe Q. Teleologist. So when groups like the NCSE and the Panda's Thumb accuse him of things he knows are wrong, Joe will probably react by no longer taking those groups seriously. If he can't trust the critics on something he's intimately familiar with, why should he trust them on something he is unfamiliar with, such as the origin of life or the bacterial flagellum?

Some of us have already gotten used to living in the post-wedge world. For those youngsters just joining us, here's a hearty welcome from me and all the other Telicians. The future's going to be a fun ride!

85 Comments »

Is Darwinian Theory Misanthropic?

Posted in Evolution, Religion on July 30th, 2006 by MikeGene

According to Robert Lee Hotz, Darwin's idea has sparked a scientific revolution that has sparked a culture war. He then briefly reviews three books that "look beyond the rhetoric." Yeah, right.

One of the books that Hotz highlights by David Quammen is entitled, The Reluctant Mr. Darwin: An Intimate Portrait of Charles Darwin and the Making of His Theory of Evolution.

For those seeking faith-based alternatives to Darwin, however, evolutionary theory commits an unforgivable affront, these authors write. It unseats humanity as master of a divine creation. With its emphasis on the mechanism of natural selection, it puts people on equal biological footing with barnacles and baboons.

"[L]et's be clear: This is not evolution versus God," writes David Quammen in "The Reluctant Mr. Darwin: An Intimate Portrait of Charles Darwin and the Making of His Theory of Evolution." "The existence of God "” any sort of god, personal or abstract, immanent or distant "” is not what Darwin's evolutionary theory challenges. What it challenges is the supposed godliness of Man "” the conviction that we above all other life forms are spiritually elevated, divinely favored, possessed of an immaterial and immortal essence, such that we have special prospects for eternity, special status in the expectations of God, special rights and responsibilities on Earth."

Quammen does not flinch from "the horrible challenge" implied by Darwin's idea: "In plain language, a soul or no soul? An afterlife or not? Are humans spiritually immortal in a way that chickens or cows are not, or just another form of temporarily animated meat?"

This "horrible challenge" is actually a very weak challenge.

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Point Your Finger and Shout – "Creationist!"

Posted in The Critics, Threatiness on July 29th, 2006 by MikeGene

Click to enlarge
In this entry, I draw attention to Paul Root Wolpe's article entitled, "Reasons Scientists Avoid Thinking about Ethics." It was published in Cell, a very widely-read, prestigious scientific journal.

ID critic Edarrell responds in knee-jerk fashion:

Wolpe's premise is in gross error. Researchers in biology go through more rigorous ethical discussion of their work than any other profession, by law. Anyone engaged in research dealing with human subjects must go through an institutional review board for approval. Almost all research done on human health is reviewed multiple times. When creationists start with absolutely erroneous premises, they arrive at good results only randomly. In this case, Wolpe misses.

The ID critic's attacks are rooted in ignorance. As you can see from this page, "Dr. Paul Root Wolpe, assistant professor of psychiatry and assistant professor of sociology as well as a fellow at the Center for Bioethics at the School of Medicine, has been named the first Chief of Bioethics and Human Subject Protection for the National Aeronautics and Space Administration (NASA)."

Wolpe obviously understands the "rigorous ethical discussions" researchers must go through, just as he knows first hand about institutional reviews:

Dr. Wolpe's assignment entails providing key scientific advice and expertise for monitoring compliance with all relevant regulatory and statutory requirements; planning, organizing and integrating NASA's Institutional Review Board (IRB) and Animal Care and Use Committee (ACUC); external ethical reviews and developing standards and guidelines tailored to unique programmatic research requirements; and crafting an international bioethics policy for all countries involved in collaborative space exploration.

I think it much safer to conclude that Edarrell doesn't understand Wolpe's point. But then note the ID critic's final response "“ "When creationists start with absolutely erroneous premises, they arrive at good results only randomly. In this case, Wolpe misses."

Did you catch that? The ID critic just labeled Wolpe as a creationist! So you see, even in the post-wedge world it still takes very little to get an ID critic to point their finger and scream, "Creationist!" First, they see creationists in mainstream science textbooks.. Now they accuse the first Chief of Bioethics and Human Subject Protection for the National Aeronautics and Space Administration of being a creationist!

Creationists everywhere!

Threatiness is poisonous to critical thinking.

Evolution is Cruel to Dawkins and Dennett

Posted in Evolution, Religion on July 29th, 2006 by MikeGene

Jack Miles reviews Daniel Dennett's anti-religious book, Breaking The Spell. It is an interesting review, but I think Miles fails to fully extract a deeper message – contained within the review are two points that underscore the manner in which Evolution has been exceedingly cruel to Daniel Dennett and his tag-team partner, Richard Dawkins. Dennett relies on evolutionary psychology to explain the origin and existence of religion. And it looks like his partner, Richard Dawkins, will play up the same angle in his anti-religious book, The God Delusion.

All of this is ironic given that evolutionary biologist Jerry Coyne refers to evolutionary psychology as the "latest deadweight dragging us closer to phrenology." That Dennett and Dawkins have chosen such a flabby, albeit faddish, club suggests they possess a certain desperation to rid the world of religion. Nevertheless, for the purpose of this blog, let us imagine that their thesis is completely valid "“ there is no God and natural selection simply shaped our brains such that we are predisposed to accept the God delusion. Such a reality is a sad place for Dennett and Dawkins.

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Evo-Pysch Break Throughs

Posted in Evolutionary Psychology on July 28th, 2006 by MikeGene

Effectively, the new theory–"selective investment theory"–presents a striking alternative to traditional self-interest theories of close relationships that tend to emphasize what individuals get from others, not what they give.

"Viewed through the lens of selective investment theory," Stephanie Brown said, "the fabric of close relationships appears different. Sacrifice becomes a characteristic feature of healthy, enduring relationships rather than aberrant, inexplicable, or diagnostic of pathology".

What makes selective investment theory distinctive is not only its focus on high-cost altruism, but also its premise that "selfish genes" are ultimately responsible for selfless, other-directed behavior. -Here

If you say ID theory, that's evidence that you don't understand what theory is and thus you don't understand science. If you say selective investment theory, that's a new theory in science. That new, fruitful field of evo-psych keeps coming up with new theories.

Men who have skipped lunch find larger women more attractive than their slimmer counterparts, new research has revealed.

A team of psychologists established that men who are hungry are attracted to plumper women, but the researchers found that, once they had eaten, men's taste in women reverted to those with slimmer figures.

The academics suggest the phenomenon arises from primeval associations between larger body sizes and health and survival. -Here

Why be so PC about this? This is powerful evo-psych evidence that selection shaped us to be cannibals.

10 Comments »

Ground-breaking research

Posted in Humor on July 28th, 2006 by MikeGene

From here

A study of low-income housing residents has documented that the more television people say they watched, the less active they were, researchers from Dana-Farber Cancer Institute and colleagues report.

:shock:

[....]

The research was funded by grants from the National Cancer Institute, Liberty Mutual, National Colorectal Cancer Research Alliance, and the Patterson Fellowship Fund.

:roll:

1 Comment »

It's Coming…

Posted in Richard Dawkins, The Critics on July 27th, 2006 by MikeGene

From the Professor for the Public Understanding of Science

Synopsis

Richard Dawkins was recently voted one of the world's top three intellectuals (alongside Umberto Eco and Noam Chomsky) by "Prospect" magazine. As the author of many, now famous, classic works on science and philosophy, he has always asserted the irrationality of belief in God and the grievous harm it has inflicted on society. He now turns his fierce intellect exclusively on this subject, denouncing its faulty logic and the suffering it causes. While Europe is becoming increasingly secularized, the rise of religious fundamentalism, whether in the Middle East or Middle America, is dramatically and dangerously dividing opinion around the world. In America, and elsewhere, a vigorous dispute between 'intelligent design' and Darwinism is seriously undermining and restricting the teaching of science. In many countries religious dogma from medieval times still serves to abuse basic human rights such as women's and gay rights. And all from a belief in a God whose existence lacks evidence of any kind. Dawkins attacks God in all his forms, from the sex-obsessed, cruel tyrant of the Old Testament to the more benign, but still illogical, Celestial Watchmaker favoured by some Enlightenment thinkers. He eviscerates the major arguments for religion and demonstrates the supreme improbability of a supreme being. He shows how religion fuels war, foments bigotry and abuses children. In "The God Delusion" Dawkins presents a hard-hitting, impassioned rebuttal of religion of all types and does so in the lucid, witty and powerful language for which he is renowned. It is a brilliantly argued, fascinating polemic that will be required reading for anyone interested in this most emotional and important subject.

[I'm actually looking forward to reading this book. - MG :mrgreen: ]

29 Comments »

A thought experiment

Posted in Philosophy, Philosophy of Mind, Random Stuff on July 26th, 2006 by Deuce

Bill is a mad scientist who has invented a remote control device that allows him to take complete control of another person's body. All he has to do is point it at someone, and instantly he can control them with his mind. You are a philosophy student. One day, you are in class about to take a test. It is a logic test – you know, the kind with questions of the following sort:

If all wuzzles are buzzles, and some fuzzles are wuzzles, which of the following must be true?

A) All buzzles are fuzzles
B) Some fuzzles are buzzles
C) All fuzzles are buzzles
D) A and B above
E) None of the above

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Lessons from a Worm

Posted in Brain, Evolution, Front-loading on July 26th, 2006 by MikeGene

Click to enlarge Velvet worms are cool. They flourished about 520 million years ago, although they are restricted in their distribution today. These worms are carnivorous and the catch their prey by secreting a sticky, glue-like substance. Might this represent a precursor-like state for the spider's web?
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Those Amazing Motors

Posted in Biology on July 26th, 2006 by MikeGene

From Here:

Motor proteins perform directed walks on cytoskeletal ï¬?laments and enable fast transport over large intracellular distances along the ï¬?lament-like "˜rails' provided by the cytoskeleton. In addition to their function as nano-tractors, motor proteins are also actively involved in the constant re-organization of the cytoskeleton itself, which is necessary for cell motility and mitosis.

1 Comment »

Science and Ethics

Posted in Bioethics on July 25th, 2006 by MikeGene

PZ Myers does nothing more than scoff at Sen. Santorum, who apparently said/wrote, "Most scientists unfortunately, those that certainly are advocating for this [embryonic stem cell research], and many others feel very little moral compulsion. It's a utilitarian, materialistic view of doing whatever they can do to pursue their desired goals."

Yet the June 13, 2006 issue of Cell has an article by Paul Root Wolpe, from the Department of Psychiatry and Center for Bioethics at the University of Pennsylvania School of Medicine.

Wolpe's article is entitled, "Reasons Scientists Avoid Thinking about Ethics." Some excerpts from the article are below the fold:
Read the rest of this entry »

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The Importance of Location

Posted in Biology on July 24th, 2006 by MikeGene

Acetyl-CoenzymeA (acetyl-CoA) is a central compound of metabolism and an essential building block for the synthesis of fatty acids and amino acids. When cells are growing on glucose, the glucose is broken down to pyruvate, which in turn is converted into acetyl-CoA (by pyruvate dehydrogenase) that is then fed into the Kreb's cycle within mitochondria. An alternative mechanism of generating acetyl-CoA is to use the enzyme acetyl-CoA synthetase, an enzyme that attaches coenzyme A to acetate with the expenditure of ATP.

Yeast have two versions of enzyme acetyl-CoA synthetase, where the 600 amino-acid length proteins share about 60% sequence identity and catalyze the same basic reaction. One version is called Acs1p and when scientists knocked out this gene, nothing much happens. But when the other version, known as Asc2p is knocked out, yeast shut down about 70% of their genes and then die. What's going on?
More

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Theocracy and Threatiness

Posted in Religion, The Critics, Threatiness on July 24th, 2006 by MikeGene

Here is a very good essay that skewers all the hysteria about some upcoming theocracy. It is written by Ross Douthat, an associate editor at the Atlantic Monthly.

The article has a couple of brief mentions about Intelligent Design, but that is not the main reason I draw attention to it. I happen to think Douthat has his finger on the Fear that largely fuels the threatiness that characterizes so many critics of ID. Simply browse the many "pro-science" blogs that often critique ID and chances are, you'll find other entries on those blogs that wallow, to one degree or another, in some of the Fear that Douthat writes about. Besides, remember that most critics hear "Religion/God/Bible" when "ID" is spoken or written.

Anyway, it's a long article, but worth the read. It's hard to pick a favorite quote, but here's a juicy one:

The tragedy is that so many religious people have gone along with this revisionism"”out of sympathy for the lifestyle liberalism of the secular Left, or out of disdain for the crudity and anti-intellectualism of some religious conservatives, or out of embarrassment in the face of a culture that sneers at anyone who takes their faith too seriously. In the process, they have become everything they claim to oppose: bigoted and hysterical, apocalyptic and self-righteous. What's worse, they have corrupted themselves for the sake of a politics that cares nothing for their faith"”that would tame it to suit the needs of secular society or do away with it entirely. (emphasis added)

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